Ramanathan, Sowdhamini: шукати на сайті Z-Library

Kanagarajadurai, Karuppiah, Malini, Manoharan, Bhattacharya, Aditi, Panicker, Mitradas M., Sowdhamini, Ramanathan

Рік:

2004

Мова:

english

Файл:

PDF, 427 KB

english, 2004

Molecular modeling and docking studies of human 5-hydroxytryptamine 2A (5-HT2A) receptor for the identification of hotspots for ligand binding

Журнал:

Dharmaprakash, Akhilandeswarre, Mutt, Eshita, Jaleel, Abdul, Ramanathan, Sowdhamini, Thomas, Sabu

Рік:

2009

Мова:

english

Файл:

PDF, 2.51 MB

english, 2009

Proteome profile of a pandemic Vibrio parahaemolyticus SC192 strain in the planktonic and biofilm condition

Журнал:

Biofouling

Рік:

2014

Мова:

english

Файл:

PDF, 1.03 MB

english, 2014

An in-silico approach towards the identification of novel inhibitors of the TLR-4 signaling pathway

Mahita, Jarjapu, Harini, K., Pichika, Mallikarjuna Rao, Sowdhamini, Ramanathan

Журнал:

Frontiers in Cellular Neuroscience

Рік:

2015

Мова:

english

Файл:

PDF, 3.15 MB

english, 2015

A Functional Agonist of Insect Olfactory Receptors: Behavior, Physiology and Structure

Batra, Srishti, Corcoran, Jacob, Zhang, Dan-Dan, Pal, Pramit, K.P., Umesh, Kulkarni, Renuka, Löfstedt, Christer, Sowdhamini, Ramanathan, Olsson, Shannon B.

Журнал:

Рік:

2019

Мова:

english

Файл:

PDF, 6.87 MB

english, 2019

CUSP: an algorithm to distinguish structurally conserved and unconserved regions in protein domain alignments and its application in the study of large length variations

Sankaran Sandhya, Barah Pankaj, Kande Madabosse Govind, Bernard Offmann, Narayanaswamy Srinivasan, Ramanathan Sowdhamini

Журнал:

BMC Structural Biology

Рік:

2008

Мова:

english

Файл:

PDF, 1.91 MB

english, 2008

3PFDB - A database of Best Representative PSSM Profiles (BRPs) of Protein Families generated using a novel data mining approach

Khader Shameer, Paramasivam Nagarajan, Kumar Gaurav, Ramanathan Sowdhamini

Журнал:

BioData Mining

Рік:

2009

Мова:

english

Файл:

PDF, 2.29 MB

english, 2009

Fold prediction and comparative modeling of Bdm1: a probable α/β hydrolase associated with hot water epilepsy

Anirban Bhaduri, Lakshminarasimhan Krishnaswamy, Gautam R. Ullal, Mitradas M. Panicker, Ramanathan Sowdhamini

Журнал:

Mathias-Costa Blaise, Ramanathan Sowdhamini, Metpally Raghu Prasad Rao, Nithyananda Pradhan

Рік:

2003

Мова:

english

Файл:

PDF, 393 KB

english, 2003

Evolutionary trace analysis of ionotropic glutamate receptor sequences and modeling the interactions of agonists with different NMDA receptor subunits

Журнал:

Mathias-Costa Blaise, Ramanathan Sowdhamini, Nithyananda Pradhan

Рік:

2004

Мова:

english

Файл:

PDF, 866 KB

english, 2004

Comparative analysis of different competitive antagonists interaction with NR2A and NR2B subunits ofN-methyl-D-aspartate (NMDA) ionotropic glutamate receptor

Журнал:

Marimuthu Parthiban, Piramanayagam Shanmughavel, Ramanathan Sowdhamini

Рік:

2005

Мова:

english

Файл:

PDF, 866 KB

english, 2005

In silico point mutation and evolutionary trace analysis applied to nicotinic acetylcholine receptors in deciphering ligand-binding surfaces

Журнал:

Raghu Prasad Rao Metpally, Ramakrishnan Vigneshwar, Ramanathan Sowdhamini

Рік:

2010

Мова:

english

Файл:

PDF, 1.31 MB

english, 2010

Genome inventory and analysis of nuclear hormone receptors inTetraodon nigroviridis

Журнал:

Journal of Biosciences

Рік:

2007

Мова:

english

Файл:

PDF, 324 KB

english, 2007

PeptideMine - A webserver for the design of peptides for protein-peptide binding studies derived from protein-protein interactomes

Khader Shameer, Lalima L Madan, Shivamurthy Veeranna, Balasubramanian Gopal, Ramanathan Sowdhamini

Журнал:

Pandurangan Sundaramurthy, Khader Shameer, Raashi Sreenivasan, Sunita Gakkhar, Ramanathan Sowdhamini

Рік:

2010

Мова:

english

Файл:

PDF, 884 KB

english, 2010

HORI: a web server to compute Higher Order Residue Interactions in protein structures

Журнал:

Saikat Chakrabarti, Nitin Bhardwaj, Prem A Anand, Ramanathan Sowdhamini

Рік:

2010

Мова:

english

Файл:

PDF, 567 KB

english, 2010

Improvement of alignment accuracy utilizing sequentially conserved motifs

Журнал:

Anirban Bhaduri, Ganesan Pugalenthi, Ramanathan Sowdhamini

Рік:

2004

Мова:

english

Файл:

PDF, 1.34 MB

english, 2004

PASS2: an automated database of protein alignments organised as structural superfamilies

Журнал:

Chilamakuri CS Reddy, Khader Shameer, Bernard O Offmann, Ramanathan Sowdhamini

Рік:

2004

Мова:

english

Файл:

PDF, 923 KB

english, 2004

PURE: A webserver for the prediction of domains in unassigned regions in proteins

Журнал:

Raghu Prasad Rao Metpally, Ramanathan Sowdhamini

Рік:

2008

Мова:

english

Файл:

PDF, 1.28 MB

english, 2008

Genome wide survey of G protein-coupled receptors inTetraodon nigroviridis

Журнал:

BMC Evolutionary Biology

Рік:

2005

Мова:

english

Файл:

PDF, 395 KB

english, 2005

Cross genome phylogenetic analysis of human andDrosophilaG protein-coupled receptors: application to functional annotation of orphan receptors

Raghu Prasad Rao Metpally, Ramanathan Sowdhamini

Журнал:

BMC Genomics

Рік:

2005

Мова:

english

Файл:

PDF, 609 KB

english, 2005

A novel meta-cleavage product hydrolase from Flavobacterium sp. ATCC27551

Syed Khajamohiddin, Pakala Suresh Babu, Deviprasanna Chakka, Mike Merrick, Anirban Bhaduri, Ramanathan Sowdhamini, Dayananda Siddavattam

Журнал:

Biochemical and Biophysical Research Communications

Рік:

2006

Мова:

english

Файл:

PDF, 1.16 MB

english, 2006

Re-visiting protein-centric two-tier classification of existing DNA-protein complexes

Sony Malhotra, Ramanathan Sowdhamini

Журнал:

Margaret S Sunitha, Anu G Nair, Amol Charya, Kamalakar Jadhav, Sami Mukhopadhyay, Ramanathan Sowdhamini

Рік:

2012

Мова:

english

Файл:

PDF, 961 KB

english, 2012

Structural attributes for the recognition of weak and anomalous regions in coiled-coils of myosins and other motor proteins

Журнал:

BMC Research Notes

Рік:

2012

Мова:

english

Файл:

PDF, 780 KB

english, 2012

100 ns Molecular Dynamics Simulations to Study Intramolecular Conformational Changes in Bax

Koshy, Caroline, Parthiban, Marimuthu, Sowdhamini, Ramanathan

Журнал:

Sukhwal, Anshul, Sowdhamini, Ramanathan

Рік:

2010

Мова:

english

Файл:

PDF, 2.98 MB

english, 2010

Oligomerisation status and evolutionary conservation of interfaces of protein structural domain superfamilies

Журнал:

Naika, Mahantesha, Shameer, Khader, Sowdhamini, Ramanathan

Рік:

2013

Мова:

english

Файл:

PDF, 3.31 MB

english, 2013

Comparative analyses of stress-responsive genes in Arabidopsis thaliana: insight from genomic data mining, functional enrichment, pathway analysis and phenomics

Журнал:

Blaise, Mathias-Costa, Bhattacharyya, Dananjay, Sowdhamini, Ramanathan, Pradhan, Nityananda

Рік:

2013

Мова:

english

Файл:

PDF, 23.94 MB

english, 2013

Structural Consequences of D481N/K483Q Mutation at Glycine Binding Site of NMDA Ionotropic Glutamate Receptors: A Molecular Dynamics Study

Журнал:

Khader Shameer, Ramanathan Sowdhamini

Рік:

2005

Мова:

english

Файл:

PDF, 1.45 MB

english, 2005

Functional repertoire, molecular pathways and diseases associated with 3D domain swapping in the human proteome

Журнал:

Journal of Clinical Bioinformatics

Рік:

2012

Мова:

english

Файл:

PDF, 820 KB

english, 2012

Insights on pH-dependent conformational changes of mosquito odorant binding proteins by molecular dynamics simulations

Manoharan, Malini, Fuchs, Patrick F.J., Sowdhamini, Ramanathan, Offmann, Bernard

Журнал:

Mudgal, Richa, Sowdhamini, Ramanathan, Chandra, Nagasuma, Srinivasan, Narayanaswamy, Sandhya, Sankaran

Рік:

2014

Мова:

english

Файл:

PDF, 570 KB

english, 2014

Filling-in Void and Sparse Regions in Protein Sequence Space by Protein-Like Artificial Sequences Enables Remarkable Enhancement in Remote Homology Detection Capability

Журнал:

Journal of Molecular Biology

Рік:

2014

Мова:

english

Файл:

PDF, 1.11 MB

english, 2014

Structural updates of alignment of protein domains and consequences on evolutionary models of domain superfamilies

Mutt, Eshita, Rani, Sudha, Sowdhamini, Ramanathan

Журнал:

BioData Mining

Рік:

2013

Мова:

english

Файл:

PDF, 1010 KB

english, 2013

Homology Modeling and Molecular Dynamics Simulation Studies of the human resistin protein

Sekhar Reddy, Chilamakuri C., Sowdhamini, Ramanathan, Offmann, Bernard

Журнал:

Biophysical Journal

Рік:

2009

Мова:

english

Файл:

PDF, 51 KB

english, 2009

Mathematical and Statistical Aspects of DNA and Protein Sequence Analysis || The Recognition of Protein Structure and Function from Sequence: Adding Value to Genome Data [and Discussion]

Alex C. W. May, Mark S. Johnson, Stephen D. Rufino, Hiroshi Wako, Zhan-Yang Zhu, Ramanathan Sowdhamini, Narayanaswamy Srinivasan, Michael A. Rodionov, Tom L. Blundell and G. A. Dover

Журнал:

Philosophical Transactions Biological Sciences

Рік:

1994

Мова:

english

Файл:

PDF, 1.84 MB

english, 1994

Decoding the structural events in substrate-gating mechanism of eukaryotic prolyl oligopeptidase using normal mode analysis and molecular dynamics simulations

Kaushik, Swati, Etchebest, Catherine, Sowdhamini, Ramanathan

Журнал:

Proteins: Structure, Function, and Bioinformatics

Рік:

2014

Мова:

english

Файл:

PDF, 1.67 MB

english, 2014

[IEEE 2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - Orlando, FL, USA (2011.02.3-2011.02.5)] 2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - Poster: HORIBALFRE: Higher Order Residue Interactions Based ALgorithm for Fold REcognition

Sundaramurthy, Pandurangan, Sreenivasan, Raashi, Shameer, Khader, Gakkhar, Sunita, Sowdhamini, Ramanathan

Рік:

2011

Мова:

english

Файл:

PDF, 145 KB

english, 2011

[IEEE 2010 IEEE International Conference on Data Mining Workshops (ICDMW) - Sydney, TBD, Australia (2010.12.13-2010.12.13)] 2010 IEEE International Conference on Data Mining Workshops - A Sequence Data Mining Protocol to Identify Best Representative Sequence for Protein Domain Families

Gowri, V.S., Shameer, Khader, Reddy, Chilamakuri Chandra Sekhar, Shingate, Prashant, Sowdhamini, Ramanathan

Рік:

2010

Мова:

english

Файл:

PDF, 504 KB

english, 2010

Phylogenetic Analysis and Selection Pressures of 5-HT Receptors in Human and Non-human Primates: Receptor of an Ancient Neurotransmitter

Anbazhagan, Padmanabhan, Purushottam, Meera, Kiran Kumar, H. B., Mukherjee, Odity, Jain, Sanjeev, Sowdhamini, Ramanathan

Журнал:

Johnson, Mark S., Srinivasan, Narayanaswamy, Sowdhamini, Ramanathan, Blundell, Tom L

Рік:

2010

Мова:

english

Файл:

PDF, 3.12 MB

english, 2010

Knowledge-Based Protein Modeling

Журнал:

Critical Reviews in Biochemistry and Molecular Biology

Рік:

1994

Мова:

english

Файл:

PDF, 5.27 MB

english, 1994

Enriching the annotation of Mycobacterium tuberculosis H37Rv proteome using remote homology detection approaches: Insights into structure and function

Ramakrishnan, Gayatri, Ochoa-Montaño, Bernardo, Raghavender, Upadhyayula S., Mudgal, Richa, Joshi, Adwait G., Chandra, Nagasuma R., Sowdhamini, Ramanathan, Blundell, Tom L., Srinivasan, Narayanaswamy

Журнал:

Tuberculosis

Рік:

2015

Мова:

english

Файл:

PDF, 1.98 MB

english, 2015

ECMIS: computational approach for the identification of hotspots at protein-protein interfaces

Shingate, Prashant, Manoharan, Malini, Sukhwal, Anshul, Sowdhamini, Ramanathan

Журнал:

Sony Malhotra,Ramanathan Sowdhamini

Рік:

2014

Мова:

english

Файл:

PDF, 1019 KB

english, 2014

Sequence search and analysis of gene products containing RNA recognition motifs in the human genome

Журнал:

BMC Genomics

Рік:

2014

Мова:

english

Файл:

PDF, 1.03 MB

english, 2014

Association of Putative Members to Family of Mosquito Odorant Binding Proteins: Scoring Scheme Using Fuzzy Functional Templates and Cys Residue Positions

Ramanathan, Sowdhamini, Malini, Manoharan, Sankar, Kannan, Bernard, Offmann, Ramanathan, Sowdhamini

Журнал:

Bioinformatics and Biology Insights

Рік:

2013

Мова:

english

Файл:

PDF, 7.40 MB

english, 2013

Collation and analyses of DNA-binding protein domain families from sequence and structural databanks

Malhotra, Sony, Sowdhamini, Ramanathan

Журнал:

Kumar, Jitendra, Choudhary, Bikash C., Metpally, Raghu, Zheng, Qun, Nonet, Michael L., Ramanathan, Sowdhamini, Klopfenstein, Dieter R., Koushika, Sandhya P., Goodman, Miriam B.

Рік:

2015

Мова:

english

Файл:

PDF, 1.95 MB

english, 2015

The Caenorhabditis elegans Kinesin-3 Motor UNC-104/KIF1A Is Degraded upon Loss of Specific Binding to Cargo

Журнал:

PLoS Genetics

Рік:

2010

Мова:

english

Файл:

PDF, 3.30 MB

english, 2010

172 Computational analysis and prediction of proteins that undergo domain swapping

Shingate, Prashant, Upadhyay, Atul, Khader, Shameer, Sowdhamini, Ramanathan

Журнал:

Kaushik, Swati, Sowdhamini, Ramanathan

Рік:

2015

Мова:

english

Файл:

PDF, 572 KB

english, 2015

Distribution, classification, domain architectures and evolution of prolyl oligopeptidases in prokaryotic lineages

Журнал:

BMC Genomics

Рік:

2014

Мова:

english

Файл:

PDF, 3.65 MB

english, 2014

Rapid and enhanced remote homology detection by cascading hidden Markov model searches in sequence space

Kaushik, Swati, Nair, Anu G, Mutt, Eshita, Subramanian, Hari Prasanna, Sowdhamini, Ramanathan

Журнал:

Bioinformatics

Рік:

2015

Мова:

english

Файл:

PDF, 1.00 MB

english, 2015

Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment

Shameer, Khader, Tripathi, Lokesh P., Kalari, Krishna R., Dudley, Joel T., Sowdhamini, Ramanathan

Журнал:

Briefings in Bioinformatics

Рік:

2015

Мова:

english

Файл:

PDF, 1.46 MB

english, 2015

DOCKSCORE: a webserver for ranking protein-protein docked poses

Malhotra, Sony, Mathew, Oommen K, Sowdhamini, Ramanathan

Журнал: